PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001364-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 266aa    MW: 30110.6 Da    PI: 6.2867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001364-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.7e-08160206454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h+ +Er RR++iN ++  L++l+P +     k +  a++L + ++Y++sL
  WALNUT_00001364-RA 160 SHSLAERVRRQKINYKLRCLQDLVPGC----RKTMGMAAMLDEIINYVHSL 206
                         8*************************9....34599999999999999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.81E-9154211No hitNo description
SuperFamilySSF474593.53E-15154218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.799156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-5160206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-8162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTGFEQCFKP SIPFSDINTA IEIISQFADP NASIMENFEI TNFTLDNFLG YQQPEYQAGM  60
AHSLSATSHL NCQNELPSLH TSSSTNDVFH ESKKRKVLEL STSSSESLPS AASRNQLKDN  120
YSSAKKNSIG KGKKKSGENE EEKQEEVIHV RAKRGQATDS HSLAERVRRQ KINYKLRCLQ  180
DLVPGCRKTM GMAAMLDEII NYVHSLKNQV EFLSTELTAA CTHDLIWYTE AAEKAKGTNS  240
HEVHEMENWE REQYGEQTLF HSTWPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033256.12e-96Basic helix-loop-helix DNA-binding superfamily protein, putative
TrEMBLA0A061EIH62e-96A0A061EIH6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGPOPTR_0005s15590.11e-82(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144121218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.17e-43bHLH family protein